EpiNexus is a web platform for analysing epigenomic sequencing data — ChIP-seq, CUT&Tag, CUT&RUN, ATAC-seq and DNA methylation — built so every biologist can run publication-ready analyses without bioinformatics expertise. It is developed in Linköping, Sweden.
Make epigenomic analysis accessible to every research lab. EpiNexus handles everything from quality control to super-enhancer detection through a simple web interface — so you spend time on biology, not wrestling with command-line tools.
Traditional epigenomics workflows require you to install and connect dozens of separate tools. EpiNexus replaces all of that with a single web app: upload your files, click run, and explore interactive results — no coding, no terminal, no pipeline scripting.
EpiNexus supports a range of epigenomic assays and histone modifications.
The standard method for profiling histone modifications and transcription factor binding
Low-input chromatin profiling methods, ideal for limited cell numbers
Measures open chromatin accessibility across the genome
Bisulfite sequencing (WGBS and RRBS), from FASTQ or Bismark coverage files
Active enhancers & promoters
Polycomb-repressed regions
Primed enhancers & active promoters
Heterochromatin & gene bodies