References

Ahdesmäki, Miika J., Simon R. Gray, Justin H. Johnson, and Zhongwu Lai. 2016. “Disambiguate: An Open-Source Application for Disambiguating Two Species in Next Generation Sequencing Data from Grafted Samples.” F1000Research 5: 2741. https://doi.org/10.12688/f1000research.10082.2.

Amemiya, Haley M., Anshul Kundaje, and Alan P. Boyle. 2019. “The ENCODE Blacklist: Identification of Problematic Regions of the Genome.” Scientific Reports 9: 9354. https://doi.org/10.1038/s41598-019-45839-z.

Bailey, Timothy L., and Charles E. Grant. 2021. SEA: Simple Enrichment Analysis of Motifs. bioRxiv preprint. https://doi.org/10.1101/2021.08.23.457422.

Barrett, Tanya, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, et al. 2013. “NCBI GEO: Archive for Functional Genomics Data Sets—Update.” Nucleic Acids Research 41 (D1): D991–95. https://doi.org/10.1093/nar/gks1193.

Barski, Artem, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E. Schones, et al. 2007. “High-Resolution Profiling of Histone Methylations in the Human Genome.” Cell 129 (4): 823–37. https://doi.org/10.1016/j.cell.2007.05.009.

Boogerd, Cornelis J., Ilaria Perini, Eirini Kyriakopoulou, Su Ji Han, Phit La, et al. 2023. “Cardiomyocyte Proliferation Is Suppressed by ARID1A-Mediated YAP Inhibition During Cardiac Maturation.” Nature Communications 14 (1): 4716. https://doi.org/10.1038/s41467-023-40203-2.

Bressan, Davide, Daniel Fernández-Pérez, Alessandro Romanel, and Fulvio Chiacchiera. 2024. “SpikeFlow: Automated and Flexible Analysis of ChIP-Seq Data with Spike-in Control.” NAR Genomics and Bioinformatics 6 (3): lqae118. https://doi.org/10.1093/nargab/lqae118.

Broad Institute. 2019. Picard Toolkit. Https://broadinstitute.github.io/picard/.

Buenrostro, Jason D., Paul G. Giresi, Lisa C. Zaba, Howard Y. Chang, and William J. Greenleaf. 2013. “Transposition of Native Chromatin for Fast and Sensitive Epigenomic Profiling of Open Chromatin, DNA-Binding Proteins and Nucleosome Position.” Nature Methods 10 (12): 1213–18. https://doi.org/10.1038/nmeth.2688.

Burgin, Josephine, Alisha Ahamed, Carla Cummins, Rajkumar Devraj, Khadim Gueye, et al. 2023. “The European Nucleotide Archive in 2022.” Nucleic Acids Research 51 (D1): D121–25. https://doi.org/10.1093/nar/gkac1051.

Cavalcante, Raymond G., and Maureen A. Sartor. 2017. “Annotatr: Genomic Regions in Context.” Bioinformatics 33 (15): 2381–83. https://doi.org/10.1093/bioinformatics/btx183.

Chen, Kaifu, Zheng Hu, Zheng Xia, Dongyu Zhao, Wei Li, and Jessica K. Tyler. 2016. “The Overlooked Fact: Fundamental Need for Spike-in Control for Virtually All Genome-Wide Analyses.” Molecular and Cellular Biology 36 (5): 662–67. https://doi.org/10.1128/MCB.00970-14.

Corces, M. Ryan, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A. Sinnott-Armstrong, et al. 2017. “An Improved ATAC-seq Protocol Reduces Background and Enables Interrogation of Frozen Tissues.” Nature Methods 14 (10): 959–62. https://doi.org/10.1038/nmeth.4396.

Creyghton, Menno P., Albert W. Cheng, G. Grant Welstead, Tristan Kooistra, Bryce W. Carey, et al. 2010. “Histone H3K27ac Separates Active from Poised Enhancers and Predicts Developmental State.” Proceedings of the National Academy of Sciences of the USA 107 (50): 21931–36. https://doi.org/10.1073/pnas.1016071107.

deepTools developers. 2026. bamCoverage Documentation. Https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html.

Diaz, Aaron, Kiyoub Park, Daniel A. Lim, and Jun S. Song. 2012. “Normalization, Bias Correction, and Peak Calling for ChIP-seq.” Statistical Applications in Genetics and Molecular Biology 11 (3): Article 9. https://doi.org/10.1515/1544-6115.1750.

ENCODE Data Coordination Center. 2026. ENCODE ChIP-seq Pipeline (Chip-Seq-Pipeline2). Https://github.com/ENCODE-DCC/chip-seq-pipeline2.

ENCODE Project Consortium. 2026a. ATAC-seq Data Standards and Processing Pipeline. Https://www.encodeproject.org/atac-seq/.

ENCODE Project Consortium. 2026b. Histone ChIP-seq Data Standards and Processing Pipeline. Https://www.encodeproject.org/chip-seq/histone/.

ENCODE Project Consortium. 2026c. Terms and Definitions: Quality Metrics. Https://www.encodeproject.org/data-standards/terms/.

ENCODE Project Consortium. 2026d. Whole-Genome Bisulfite Sequencing (WGBS) Data Standards. Https://www.encodeproject.org/data-standards/wgbs/.

Ewels, Philip, Måns Magnusson, Sverker Lundin, and Max Käller. 2016. “MultiQC: Summarize Analysis Results for Multiple Tools and Samples in a Single Report.” Bioinformatics 32 (19): 3047–48. https://doi.org/10.1093/bioinformatics/btw354.

Frankish, Adam, Sílvia Carbonell-Sala, Mark Diekhans, Irwin Jungreis, Jane E. Loveland, et al. 2023. “GENCODE: Reference Annotation for the Human and Mouse Genomes in 2023.” Nucleic Acids Research 51 (D1): D942–49. https://doi.org/10.1093/nar/gkac1071.

Frommer, Marianne, Louise E. McDonald, Douglas S. Millar, Christina M. Collis, Fujiko Watt, et al. 1992. “A Genomic Sequencing Protocol That Yields a Positive Display of 5-Methylcytosine Residues in Individual DNA Strands.” Proceedings of the National Academy of Sciences of the USA 89 (5): 1827–31. https://doi.org/10.1073/pnas.89.5.1827.

Fulco, Charles P., Joseph Nasser, Thouis R. Jones, Glen Munson, Drew T. Bergman, et al. 2019. “Activity-by-Contact Model of Enhancer–Promoter Regulation from Thousands of CRISPR Perturbations.” Nature Genetics 51 (12): 1664–69. https://doi.org/10.1038/s41588-019-0538-0.

Fursova, Nadezda A., Neil P. Blackledge, Manabu Nakayama, Shinsuke Ito, Yoko Koseki, et al. 2019. “Synergy Between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression.” Molecular Cell 74 (5): 1020–1036.e8. https://doi.org/10.1016/j.molcel.2019.03.024.

Gene Ontology Consortium. 2023. “The Gene Ontology Knowledgebase in 2023.” Genetics 224 (1): iyad031. https://doi.org/10.1093/genetics/iyad031.

Grandi, Fiorella C., Hailey Modi, Lucas Kampman, and M. Ryan Corces. 2022. “Chromatin Accessibility Profiling by ATAC-seq.” Nature Protocols 17 (6): 1518–52. https://doi.org/10.1038/s41596-022-00692-9.

GREAT team. 2026. GREAT Help: Output and Statistics Pages. Output: https://great-help.atlassian.net/wiki/spaces/GREAT/pages/655462/Output; Statistics: https://great-help.atlassian.net/wiki/spaces/GREAT/pages/655456/Statistics.

Gschwind, Andreas R., Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, et al. 2026. “An Encyclopedia of Human Enhancer–Gene Regulatory Interactions.” Nature 657 (8130): 179–90. https://doi.org/10.1038/s41586-026-10781-4.

Gu, Hongcang, Zachary D. Smith, Christoph Bock, Patrick Boyle, Andreas Gnirke, and Alexander Meissner. 2011. “Preparation of Reduced Representation Bisulfite Sequencing Libraries for Genome-Scale DNA Methylation Profiling.” Nature Protocols 6 (4): 468–81. https://doi.org/10.1038/nprot.2010.190.

Heinz, Sven, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C. Lin, et al. 2010. “Simple Combinations of Lineage-Determining Transcription Factors Prime Cis-Regulatory Elements Required for Macrophage and B Cell Identities.” Molecular Cell 38 (4): 576–89. https://doi.org/10.1016/j.molcel.2010.05.004.

HOMER. 2026. Finding Enriched Motifs in Genomic Regions (findMotifsGenome.pl). Http://homer.ucsd.edu/homer/ngs/peakMotifs.html.

Hu, Mengwen, Yu-Han Yeh, So Maezawa, Toshinori Nakagawa, Shosei Yoshida, and Satoshi H. Namekawa. 2024. “PRC1 Directs PRC2-H3K27me3 Deposition to Shield Adult Spermatogonial Stem Cells from Differentiation.” Nucleic Acids Research 52 (5): 2306–22. https://doi.org/10.1093/nar/gkad1203.

Irizarry, Rafael A., Christine Ladd-Acosta, Bo Wen, Zhijin Wu, Carolina Montano, et al. 2009. “The Human Colon Cancer Methylome Shows Similar Hypo- and Hypermethylation at Conserved Tissue-Specific CpG Island Shores.” Nature Genetics 41 (2): 178–86. https://doi.org/10.1038/ng.298.

Johnson, David S., Ali Mortazavi, Richard M. Myers, and Barbara Wold. 2007. “Genome-Wide Mapping of in Vivo Protein-DNA Interactions.” Science 316 (5830): 1497–502. https://doi.org/10.1126/science.1141319.

Katz, Kenneth, Oleg Shutov, Richard Lapoint, Michael Kimelman, J. Rodney Brister, and Christopher O’Sullivan. 2022. “The Sequence Read Archive: A Decade More of Explosive Growth.” Nucleic Acids Research 50 (D1): D387–90. https://doi.org/10.1093/nar/gkab1053.

Kaya-Okur, Hatice S., Steven J. Wu, Christine A. Codomo, Erica S. Pledger, Terri D. Bryson, et al. 2019. “CUT&Tag for Efficient Epigenomic Profiling of Small Samples and Single Cells.” Nature Communications 10 (1): 1930. https://doi.org/10.1038/s41467-019-09982-5.

Kent, W. James, Charles W. Sugnet, Terrence S. Furey, Krishna M. Roskin, Tom H. Pringle, et al. 2002. “The Human Genome Browser at UCSC.” Genome Research 12 (6): 996–1006. https://doi.org/10.1101/gr.229102.

Kent, W. James, Ann S. Zweig, Galt Barber, Angie S. Hinrichs, and Donna Karolchik. 2010. “BigWig and BigBed: Enabling Browsing of Large Distributed Datasets.” Bioinformatics 26 (17): 2204–7. https://doi.org/10.1093/bioinformatics/btq351.

Kharchenko, Peter V., Michael Y. Tolstorukov, and Peter J. Park. 2008. “Design and Analysis of ChIP-seq Experiments for DNA-Binding Proteins.” Nature Biotechnology 26 (12): 1351–59. https://doi.org/10.1038/nbt.1508.

Korthauer, Keegan, Sutirtha Chakraborty, Yuval Benjamini, and Rafael A. Irizarry. 2019. “Detection and Accurate False Discovery Rate Control of Differentially Methylated Regions from Whole Genome Bisulfite Sequencing.” Biostatistics 20 (3): 367–83. https://doi.org/10.1093/biostatistics/kxy007.

Krueger, Felix. 2023. Trim Galore. Https://github.com/FelixKrueger/TrimGalore.

Krueger, Felix. 2026a. Bismark Documentation: Deduplication. Https://felixkrueger.github.io/Bismark/usage/deduplication/.

Krueger, Felix. 2026b. Trim Galore: RRBS Guide, Directional Libraries. Https://trimgalore.com/rrbs/directional/.

Landt, Stephen G., Georgi K. Marinov, Anshul Kundaje, Pouya Kheradpour, Florencia Pauli, et al. 2012. “ChIP-seq Guidelines and Practices of the ENCODE and modENCODE Consortia.” Genome Research 22 (9): 1813–31. https://doi.org/10.1101/gr.136184.111.

Langmead, Ben, and Steven L. Salzberg. 2012. “Fast Gapped-Read Alignment with Bowtie 2.” Nature Methods 9 (4): 357–59. https://doi.org/10.1038/nmeth.1923.

Leek, Jeffrey T., Robert B. Scharpf, Héctor Corrada Bravo, David Simcha, Benjamin Langmead, et al. 2010. “Tackling the Widespread and Critical Impact of Batch Effects in High-Throughput Data.” Nature Reviews Genetics 11 (10): 733–39. https://doi.org/10.1038/nrg2825.

Li, Heng, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, et al. 2009. “The Sequence Alignment/Map Format and SAMtools.” Bioinformatics 25 (16): 2078–79. https://doi.org/10.1093/bioinformatics/btp352.

Li, Qunhua, James B. Brown, Haiyan Huang, and Peter J. Bickel. 2011. “Measuring Reproducibility of High-Throughput Experiments.” The Annals of Applied Statistics 5 (3): 1752–79. https://doi.org/10.1214/11-AOAS466.

Lister, Ryan, Mattia Pelizzola, Robert H. Dowen, R. David Hawkins, Gary Hon, et al. 2009. “Human DNA Methylomes at Base Resolution Show Widespread Epigenomic Differences.” Nature 462 (7271): 315–22. https://doi.org/10.1038/nature08514.

Love, Michael I., Simon Anders, and Wolfgang Huber. 2026. Analyzing RNA-seq Data with DESeq2. Bioconductor package vignette, https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html.

Love, Michael I., Wolfgang Huber, and Simon Anders. 2014. “Moderated Estimation of Fold Change and Dispersion for RNA-seq Data with DESeq2.” Genome Biology 15 (12): 550. https://doi.org/10.1186/s13059-014-0550-8.

Lun, Aaron T. L., and Gordon K. Smyth. 2014. “De Novo Detection of Differentially Bound Regions for ChIP-seq Data Using Peaks and Windows: Controlling Error Rates Correctly.” Nucleic Acids Research 42 (11): e95. https://doi.org/10.1093/nar/gku351.

Lun, Aaron T. L., and Gordon K. Smyth. 2016. “Csaw: A Bioconductor Package for Differential Binding Analysis of ChIP-seq Data Using Sliding Windows.” Nucleic Acids Research 44 (5): e45. https://doi.org/10.1093/nar/gkv1191.

Machlab, Dania, Lukas Burger, Charlotte Soneson, Filippo M. Rijli, Dirk Schübeler, and Michael B. Stadler. 2022. “monaLisa: An R/Bioconductor Package for Identifying Regulatory Motifs.” Bioinformatics 38 (9): 2624–25. https://doi.org/10.1093/bioinformatics/btac102.

MACS3 developers. 2026. MACS3 Callpeak Documentation. Https://macs3-project.github.io/MACS/docs/callpeak.html.

Maresca, Michela, Teun van den Brand, Hangpeng Li, Hans Teunissen, James Davies, and Elzo de Wit. 2023. “Pioneer Activity Distinguishes Activating from Non-Activating SOX2 Binding Sites.” The EMBO Journal 42 (20): e113150. https://doi.org/10.15252/embj.2022113150.

Martin, Marcel. 2011. “Cutadapt Removes Adapter Sequences from High-Throughput Sequencing Reads.” EMBnet.journal 17 (1): 10–12. https://doi.org/10.14806/ej.17.1.200.

McLean, Cory Y., Dave Bristor, Michael Hiller, Shoa L. Clarke, Bruce T. Schaar, et al. 2010. “GREAT Improves Functional Interpretation of Cis-Regulatory Regions.” Nature Biotechnology 28 (5): 495–501. https://doi.org/10.1038/nbt.1630.

McLeay, Robert C., and Timothy L. Bailey. 2010. “Motif Enrichment Analysis: A Unified Framework and an Evaluation on ChIP Data.” BMC Bioinformatics 11: 165. https://doi.org/10.1186/1471-2105-11-165.

Meers, Michael P., Dan Tenenbaum, and Steven Henikoff. 2019. “Peak Calling by Sparse Enrichment Analysis for CUT&RUN Chromatin Profiling.” Epigenetics & Chromatin 12: 42. https://doi.org/10.1186/s13072-019-0287-4.

Meissner, Alexander, Tarjei S. Mikkelsen, Hongcang Gu, Marius Wernig, Jacob Hanna, et al. 2008. “Genome-Scale DNA Methylation Maps of Pluripotent and Differentiated Cells.” Nature 454 (7205): 766–70. https://doi.org/10.1038/nature07107.

Murray, Josiah D., Atrayee Ray, Khanmi Kasomva, Erica Steen, Cary Stelloh, et al. 2026. “Systematic Benchmarking of CUT&Tag Improves the Reliability and Reproducibility of Chromatin Analysis.” Cell Reports Methods 6 (8): 101499. https://doi.org/10.1016/j.crmeth.2026.101499.

Nasser, Joseph, Drew T. Bergman, Charles P. Fulco, Philine Guckelberger, Benjamin R. Doughty, et al. 2021. “Genome-Wide Enhancer Maps Link Risk Variants to Disease Genes.” Nature 593 (7858): 238–43. https://doi.org/10.1038/s41586-021-03446-x.

nf-core community. 2026. Nf-Core/Cutandrun: Analysis Pipeline for CUT&RUN and CUT&Tag Experiments. Https://nf-co.re/cutandrun.

Orlando, David A., Mei Wei Chen, Victoria E. Brown, Shakti Solanki, Yoon J. Choi, et al. 2014. “Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome.” Cell Reports 9 (3): 1163–70. https://doi.org/10.1016/j.celrep.2014.10.018.

Patel, Lauren A., Yuwei Cao, Eric M. Mendenhall, Christopher Benner, and Alon Goren. 2024. “The Wild West of Spike-in Normalization.” Nature Biotechnology 42 (9): 1343–49. https://doi.org/10.1038/s41587-024-02377-y.

Ramírez, Fidel, Devon P. Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, et al. 2016. “deepTools2: A Next Generation Web Server for Deep-Sequencing Data Analysis.” Nucleic Acids Research 44 (W1): W160–65. https://doi.org/10.1093/nar/gkw257.

Rauluseviciute, Ieva, Rafael Riudavets-Puig, Romain Blanc-Mathieu, Jaime A. Castro-Mondragon, Katalin Ferenc, et al. 2024. “JASPAR 2024: 20th Anniversary of the Open-Access Database of Transcription Factor Binding Profiles.” Nucleic Acids Research 52 (D1): D174–82. https://doi.org/10.1093/nar/gkad1059.

Reske, Jake J., Mike R. Wilson, and Ronald L. Chandler. 2020. “ATAC-seq Normalization Method Can Significantly Affect Differential Accessibility Analysis and Interpretation.” Epigenetics & Chromatin 13 (1): 22. https://doi.org/10.1186/s13072-020-00342-y.

Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, et al. 2015. “Integrative Analysis of 111 Reference Human Epigenomes.” Nature 518 (7539): 317–30. https://doi.org/10.1038/nature14248.

Robinson, James T., Helga Thorvaldsdottir, Douglass Turner, and Jill P. Mesirov. 2023. “Igv.js: An Embeddable JavaScript Implementation of the Integrative Genomics Viewer (IGV).” Bioinformatics 39 (1): btac830. https://doi.org/10.1093/bioinformatics/btac830.

Robinson, Mark D., and Alicia Oshlack. 2010. “A Scaling Normalization Method for Differential Expression Analysis of RNA-seq Data.” Genome Biology 11 (3): R25. https://doi.org/10.1186/gb-2010-11-3-r25.

SAM/BAM Format Specification Working Group. 2026. Sequence Alignment/Map Format Specification. Https://samtools.github.io/hts-specs/SAMv1.pdf.

Sandve, Geir Kjetil, Anton Nekrutenko, James Taylor, and Eivind Hovig. 2013. “Ten Simple Rules for Reproducible Computational Research.” PLoS Computational Biology 9 (10): e1003285. https://doi.org/10.1371/journal.pcbi.1003285.

Schurch, Nicholas J., Pietá Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, et al. 2016. “How Many Biological Replicates Are Needed in an RNA-seq Experiment and Which Differential Expression Tool Should You Use?” RNA 22 (6): 839–51. https://doi.org/10.1261/rna.053959.115.

Skene, Peter J., and Steven Henikoff. 2017. “An Efficient Targeted Nuclease Strategy for High-Resolution Mapping of DNA Binding Sites.” eLife 6: e21856. https://doi.org/10.7554/eLife.21856.

Tallan, Alexi, Jack Kucinski, Benjamin Sunkel, Cenny Taslim, Stephanie LaHaye, et al. 2025. “Highly Quantitative Measurement of Differential Protein-Genome Binding with PerCell Chromatin Sequencing.” Cell Reports Methods 5 (6): 101052. https://doi.org/10.1016/j.crmeth.2025.101052.

Vanneste, Domien, Wen Peng, Zhuangzhuang Liu, Malik Hamaïdia, Raphaël La Rocca, et al. 2026. “MafB Is a Conserved Transcriptional Regulator of Macrophage Development and Functional Identity Across Tissues and Species.” Immunity 59 (3): 559–576.e12. https://doi.org/10.1016/j.immuni.2026.01.012.

Whyte, Warren A., David A. Orlando, Denes Hnisz, Brian J. Abraham, Charles Y. Lin, et al. 2013. “Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes.” Cell 153 (2): 307–19. https://doi.org/10.1016/j.cell.2013.03.035.

Yashar, William M., Garth Kong, Jake VanCampen, Brittany M. Curtiss, Daniel J. Coleman, et al. 2022. “GoPeaks: Histone Modification Peak Calling for CUT&Tag.” Genome Biology 23: 144. https://doi.org/10.1186/s13059-022-02707-w.

Yu, Guangchuang. 2026. ChIPseeker: An R Package for ChIP Peak Annotation, Comparison and Visualization (Package Vignette, Version 1.48.0). Https://bioconductor.org/packages/release/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html.

Yu, Guangchuang, Li-Gen Wang, and Qing-Yu He. 2015. “ChIPseeker: An R/Bioconductor Package for ChIP Peak Annotation, Comparison and Visualization.” Bioinformatics 31 (14): 2382–83. https://doi.org/10.1093/bioinformatics/btv145.

Zhang, Yong, Tao Liu, Clifford A. Meyer, Jérôme Eeckhoute, David S. Johnson, et al. 2008. “Model-Based Analysis of ChIP-Seq (MACS).” Genome Biology 9 (9): R137. https://doi.org/10.1186/gb-2008-9-9-r137.

Zheng, Ye, Kami Ahmad, and Steven Henikoff. 2020. CUT&Tag Data Processing and Analysis Tutorial. Protocols.io. https://doi.org/10.17504/protocols.io.bjk2kkye.

Zhu, Anqi, Joseph G. Ibrahim, and Michael I. Love. 2019. “Heavy-Tailed Prior Distributions for Sequence Count Data: Removing the Noise and Preserving Large Differences.” Bioinformatics 35 (12): 2084–92. https://doi.org/10.1093/bioinformatics/bty895.

Zocher, Sara, Rupert W. Overall, Gabriel Berdugo-Vega, Nicole Rund, Anne Karasinsky, et al. 2021. “De Novo DNA Methylation Controls Neuronal Maturation During Adult Hippocampal Neurogenesis.” The EMBO Journal 40 (18): e107100. https://doi.org/10.15252/embj.2020107100.

Zou, Zhaonan, Tazro Ohta, and Shinya Oki. 2024. “ChIP-Atlas 3.0: A Data-Mining Suite to Explore Chromosome Architecture Together with Large-Scale Regulome Data.” Nucleic Acids Research 52 (W1): W45–53. https://doi.org/10.1093/nar/gkae358.